Index

A

analyze_abnormal() (qcorr method) analyze_isom() (qcorr method) analyze_normal() (qcorr method) aqme module aqme.cmin module aqme.csearch.base module aqme.filter module aqme.qcorr module

aqme.qcorr_utils module aqme.qdescp module aqme.qprep module aqme.utils module aqme.vismol module auto_sampling() (csearch method)

C

cclib_atoms_coords() (in module aqme.utils) cclib_init() (qcorr method) charge_mult_cmin() (cmin method) check_isomerization() (in module aqme.qcorr_utils) check_run() (in module aqme.utils)

cmin (class in aqme.cmin) collect_xtb_properties() (qdescp method) command_line_args() (in module aqme.utils) compute_confs() (csearch method) conformer_generation() (csearch method) csearch (class in aqme.csearch)

D

detect_linear() (in module aqme.qcorr_utils)

dihedral_filter_and_sdf() (csearch method)

E

embed_conf() (csearch method)

ewin_filter() (in module aqme.filter)

F

fatal() (Logger method) filters() (in module aqme.filter)

finalize() (Logger method) fix_imag_freqs() (qcorr method) full_check() (in module aqme.qcorr_utils)

G

gen_connectivity() (in module aqme.qcorr_utils) genConformer_r() (csearch method) get_cclib_params() (in module aqme.qcorr_utils) get_cmin_model() (cmin method)

get_conf_RMS() (in module aqme.utils) get_header() (qprep method) get_info_input() (in module aqme.utils) get_json_data() (in module aqme.qcorr_utils) get_tail() (qprep method)

J

json_gen() (qcorr method)

L

load_from_yaml() (in module aqme.utils) load_jobs() (csearch method)

load_variables() (in module aqme.utils) Logger (class in aqme.utils)

M

min_after_embed() (csearch method) min_and_E_calc() (csearch method) module aqme aqme.cmin aqme.csearch.base aqme.filter aqme.qcorr aqme.qcorr_utils aqme.qdescp aqme.qprep aqme.utils aqme.vismol

mol_from_sdf_or_mol_or_mol2() (in module aqme.utils) MolTo3DView() (vismol method) move_file() (in module aqme.utils)

O

organize_outputs() (qcorr method)

P

pre_E_filter() (in module aqme.filter)

Q

qcorr (class in aqme.qcorr) qcorr_fixing() (qcorr method) qcorr_processing() (qcorr method)

qdescp (class in aqme.qdescp) QM_coords() (in module aqme.utils) qprep (class in aqme.qprep) qprep_coords() (qprep method)

R

rdkit_to_sdf() (csearch method) read_file() (in module aqme.utils) read_xyz_charge_mult() (in module aqme.utils)

RMSD_and_E_filter() (in module aqme.filter) run_command() (in module aqme.utils) run_sp_xtb() (qdescp method)

S

set_metal_atomic_number() (in module aqme.utils)

substituted_mol() (in module aqme.utils) summ_search() (csearch method)

V

vismol (class in aqme.vismol)

W

write() (Logger method)

write_qcorr_csv() (qcorr method)